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Msp_g06147


Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00177580 evm_27.TU.AmTr_v1... High mobility group B protein 9 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g020072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38399 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14161 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00752.t1 Aspi01Gene00752 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Dde_g05306 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
MA_48961g0010 No alias High mobility group B protein 9 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_84030g0010 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_904340g0010 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Pnu_g23960 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Spa_g01322 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 315 382
IPR001606 ARID_dom 81 165
No external refs found!