Msp_g05544 (AtRABA5d, RABA5d)

Aliases : AtRABA5d, RABA5d

Description : A-class RAB GTPase & original description: none

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g05544
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AT1G05810	ARA-1, ATRABA5E,...	RAB GTPase homolog A5E	0.03	OrthoFinder output from all 47 species
AT1G16920	ATRABA1B, RAB11, RABA1b	RAB GTPase homolog A1B	0.02	OrthoFinder output from all 47 species
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.02	OrthoFinder output from all 47 species
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.02	OrthoFinder output from all 47 species
AT4G18430	AtRABA1e, RABA1e	RAB GTPase homolog A1E	0.02	OrthoFinder output from all 47 species
Aev_g31350	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g00731	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g29604	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g03446	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g20651	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01569	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22189	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22467	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69385.t1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.32G031600.1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g03700	ARA-1, ATRABA5E,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g50243	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01005281001	AtRABA5b, RABA5b	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
LOC_Os01g54590.1	ATRABA1B, RAB11,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os05g01480.1	ATRABA2A,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os05g20050.1	RAB-A2C,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os05g44070.1	ATRABA1B, RAB11,...	A-class RAB GTPase	0.07	OrthoFinder output from all 47 species
LOC_Os08g41340.1	AtRABA5d,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Len_g02212	AtRABA5d, RABA5d	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Len_g28666	AtRABA5d, RABA5d	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18286	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
MpVg00760.1	AtRABA1f, RABA1f	No annotation	0.02	OrthoFinder output from all 47 species
Msp_g09974	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g04704	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g08184	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g34042	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g15032	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g27361	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02178	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g03300	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g05911	ATRABA2A,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g08711	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g61287	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026297	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=308-952	0.03	OrthoFinder output from all 47 species
Smo442026	ATRABA5C, ARA4,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Solyc05g052900.3.1	RABA2b,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Spa_g12437	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e032148_P001	ATRABA1B, RAB11,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004560	alpha-L-fucosidase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	21	184

External Links

No external refs found!

Msp_g05544 (AtRABA5d, RABA5d)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation