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  5. Msp_g03939

Msp_g03939


Description : light chain of clathrin triskelion & original description: none


Gene families : OG0002188 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002188_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g03939
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AT2G20760 No alias Clathrin light chain protein 0.05 OrthoFinder output from all 47 species
Adi_g077024 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20138 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10177 No alias light chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g00585 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g45363 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G039600.1 Ceric.36G039600 light chain of clathrin triskelion & original... 0.07 OrthoFinder output from all 47 species
Ceric.38G019700.1 Ceric.38G019700 light chain of clathrin triskelion & original... 0.04 OrthoFinder output from all 47 species
Dcu_g07971 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03560 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17820 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g58240.1 LOC_Os04g58240 light chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
LOC_Os06g51510.1 LOC_Os06g51510 light chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Len_g30485 No alias light chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05289 No alias light chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Mp2g03080.1 No alias light chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Nbi_g02810 No alias light chain of clathrin triskelion & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g16998 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c11_15000V3.1 Pp3c11_15000 Clathrin light chain protein 0.01 OrthoFinder output from all 47 species
Pp3c7_10150V3.1 Pp3c7_10150 Clathrin light chain protein 0.02 OrthoFinder output from all 47 species
Sam_g29833 No alias light chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g078540.4.1 Solyc02g078540 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc07g054180.4.1 Solyc07g054180 light chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
Spa_g04777 No alias light chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000996 Clathrin_L-chain 180 287
No external refs found!