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  5. Msp_g01621

Msp_g01621


Description : RNA chaperone *(RZ1) & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g01621

Target Alias Description ECC score Gene Family Method Actions
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 OrthoFinder output from all 47 species
Ceric.06G037800.1 GR-RBP4, GRP4,... not classified & original description: pacid=50619932... 0.04 OrthoFinder output from all 47 species
GSVIVT01016195001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ore_g18712 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10320 GR-RBP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32515 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008411 No alias RNA chaperone *(RZ1) & original description: CDS=12-860 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 126 141
IPR000504 RRM_dom 11 79
No external refs found!