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  5. Msp_g01466

Msp_g01466 (VAM3, ATVAM3,...)


Aliases : VAM3, ATVAM3, ATSYP22, SGR3, SYP22

Description : Qa-type SYP2-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0001469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g01466

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242400 SYP21, ATSYP21,... Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
GSVIVT01032954001 SYP21, ATSYP21,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Mp8g15260.1 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Solyc11g066910.3.1 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Spa_g00651 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 26 125
IPR000727 T_SNARE_dom 215 266
No external refs found!