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  5. Tin_g39745

Tin_g39745


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g39745
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT3G04840 No alias Ribosomal protein S3Ae 0.03 OrthoFinder output from all 47 species
Aop_g05100 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g20489 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre13.g568650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dac_g13329 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01018024001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01021836001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_02289 No alias component RPS3a of SSU proteome 0.03 OrthoFinder output from all 47 species
Pir_g08122 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc03g097900.3.1 Solyc03g097900 component RPS3a of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0033573 high-affinity iron permease complex IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1905862 ferroxidase complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 13 219
No external refs found!