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  5. Tin_g35005

Tin_g35005


Description : cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7) & original description: none


Gene families : OG0006155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g35005

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00150890 PDE225, PTAC7,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
Aev_g24666 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Ala_g00524 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.05 OrthoFinder output from all 47 species
Als_g11529 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
LOC_Os01g50930.1 PDE225, PTAC7,... TAC7 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Mp5g19300.1 No alias TAC7 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0033573 high-affinity iron permease complex IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1905862 ferroxidase complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!