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  5. Tin_g30856

Tin_g30856


Description : not classified & original description: none


Gene families : OG0002452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30856

Target Alias Description ECC score Gene Family Method Actions
Aop_g13543 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g65715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g19400.1 LOC_Os06g19400 C2 and GRAM domain-containing protein At1g03370... 0.03 OrthoFinder output from all 47 species
LOC_Os08g38440.1 LOC_Os08g38440 C2 and GRAM domain-containing protein At1g03370... 0.04 OrthoFinder output from all 47 species
Msp_g28109 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011264 No alias not classified & original description: CDS=1634-4543 0.03 OrthoFinder output from all 47 species
Smo118690 No alias C2 and GRAM domain-containing protein At1g03370... 0.03 OrthoFinder output from all 47 species
Spa_g08110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007814_P001 Zm00001e007814 C2 and GRAM domain-containing protein At5g50170... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR031968 VASt 279 423
IPR031968 VASt 904 1034
IPR004182 GRAM 720 785
IPR000008 C2_dom 2 101
IPR000008 C2_dom 566 665
No external refs found!