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Tin_g24736 (VCS)


Aliases : VCS

Description : scaffold component *(VCS) of mRNA decapping complex & original description: none


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g24736
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g07559 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os06g19660.1 VCS, LOC_Os06g19660 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Lfl_g18274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
MA_10431534g0020 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10431534g0030 VCS scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species
MA_39123g0010 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g14526 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Ore_g36602 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g13830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Sam_g16345 No alias scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Solyc07g065950.4.1 VCS, Solyc07g065950 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Solyc10g005920.4.1 VCS, Solyc10g005920 scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species
Spa_g07074 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e023399_P003 VCS, Zm00001e023399 scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 220 534
No external refs found!