Tin_g23699

Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g23699

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT2G37190	No alias	Ribosomal protein L11 family protein	0.04	OrthoFinder output from all 47 species
AT5G60670	No alias	Ribosomal protein L11 family protein	0.03	OrthoFinder output from all 47 species
Ala_g29977	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ala_g38012	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g04839	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g50372	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Aop_g06826	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g70967	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0004.g008501	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0279.g062260	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.15G067600.1	Ceric.15G067600	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.19G074300.1	Ceric.19G074300	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.23G070600.1	Ceric.23G070600	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g34940	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01025189001	No alias	No description available	0.04	OrthoFinder output from all 47 species
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os04g50990.1	LOC_Os04g50990	component RPL12 of LSU proteome component	0.06	OrthoFinder output from all 47 species
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Msp_g45524	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g12624	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g02380	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g02937	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c15_14410V3.1	Pp3c15_14410	Ribosomal protein L11 family protein	0.03	OrthoFinder output from all 47 species
Pp3c6_19290V3.1	Pp3c6_19290	Ribosomal protein L11 family protein	0.01	OrthoFinder output from all 47 species
Ppi_g06745	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28177	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Sam_g05606	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g06787	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g40646	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Solyc06g075180.1.1	Solyc06g075180	component RPL12 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc11g065670.1.1	Solyc11g065670	component RPL12 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Solyc11g069440.1.1	Solyc11g069440	component RPL12 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g04458	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g04459	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g22192	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e007067_P001	Zm00001e007067	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e008316_P001	Zm00001e008316	component RPL12 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e023297_P001	Zm00001e023297	component RPL12 of LSU proteome component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	HCCA
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	HCCA
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020784	Ribosomal_L11_N	62	116
IPR020783	Ribosomal_L11_C	122	191

External Links

No external refs found!

Tin_g23699

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation