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Tin_g23508


Description : TruB-type tRNA pseudouridine synthase & original description: none


Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g23508

Target Alias Description ECC score Gene Family Method Actions
AT5G14460 No alias Pseudouridine synthase family protein 0.02 OrthoFinder output from all 47 species
Dcu_g21012 No alias TruB-type tRNA pseudouridine synthase & original... 0.04 OrthoFinder output from all 47 species
Pnu_g08977 No alias TruB-type tRNA pseudouridine synthase & original... 0.03 OrthoFinder output from all 47 species
Solyc02g093460.4.1 Solyc02g093460 tRNA pseudouridine synthase (TruB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
BP GO:0017007 protein-bilin linkage IEP HCCA
BP GO:0017009 protein-phycocyanobilin linkage IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 309 459
IPR032819 TruB_C 460 503
No external refs found!