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  5. Tin_g22741

Tin_g22741


Description : ribosome docking factor *(MDM38) & original description: none


Gene families : OG0002125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g22741

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00145760 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT3G59820 No alias LETM1-like protein 0.03 OrthoFinder output from all 47 species
Cre15.g639150 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07083 No alias ribosome docking factor *(MDM38) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428337g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g09599 No alias ribosome docking factor *(MDM38) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13565 No alias ribosome docking factor *(MDM38) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g008770.2.1 Solyc11g008770 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR033122 LETM1-like_RBD 252 484
IPR002048 EF_hand_dom 686 744
No external refs found!