1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g22128

Tin_g22128


Description : U-Box-group-II E3 ubiquiTin ligase & original description: none


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g22128
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT3G47820 PUB39 PLANT U-BOX 39 0.03 OrthoFinder output from all 47 species
Aop_g04662 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035444 PUB12, AtPUB12 U-Box-group-II E3 ubiquitin ligase & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G042800.1 ATPUB45, PUB45,... U-Box-group-II E3 ubiquitin ligase & original... 0.06 OrthoFinder output from all 47 species
Dac_g09043 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40033 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03795 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.07 OrthoFinder output from all 47 species
LOC_Os09g21740.1 PUB38, ATPUB38,... E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Msp_g15300 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 561 598
IPR000225 Armadillo 601 639
IPR003613 Ubox_domain 9 77
No external refs found!