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  5. Tin_g21523

Tin_g21523 (LOS1)


Aliases : LOS1

Description : mRNA-translocation factor *(eEF2)) & original description: none


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g21523
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Adi_g109900 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13248 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g70105 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g02688 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G007600.1 LOS1, Ceric.25G007600 mRNA-translocation factor *(eEF2)) & original... 0.03 OrthoFinder output from all 47 species
Cre12.g516200 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.04 OrthoFinder output from all 47 species
Dac_g16205 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g06654 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23642 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g20190.1 LOS1 mRNA-translocation factor (eEF2) 0.2 OrthoFinder output from all 47 species
Mp2g20200.1 LOS1 mRNA-translocation factor (eEF2) 0.2 OrthoFinder output from all 47 species
Msp_g08640 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c11_25350V3.1 LOS1, Pp3c11_25350 Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 OrthoFinder output from all 47 species
Sam_g49446 No alias mRNA-translocation factor *(eEF2)) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc08g062920.3.1 LOS1, Solyc08g062920 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Spa_g06405 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g06406 LOS1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g30071 LOS1 not classified & original description: none 0.16 OrthoFinder output from all 47 species
Zm00001e006293_P001 LOS1, Zm00001e006293 mRNA-translocation factor (eEF2) 0.08 OrthoFinder output from all 47 species
Zm00001e006294_P001 LOS1, Zm00001e006294 mRNA-translocation factor (eEF2) 0.08 OrthoFinder output from all 47 species
Zm00001e029078_P002 LOS1, Zm00001e029078 mRNA-translocation factor (eEF2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 17 342
IPR000640 EFG_V-like 724 810
IPR041095 EFG_II 487 549
IPR004161 EFTu-like_2 394 467
IPR005517 Transl_elong_EFG/EF2_IV 611 722
No external refs found!