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  5. Tin_g19873

Tin_g19873


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g19873

Target Alias Description ECC score Gene Family Method Actions
Adi_g024582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31164 SLO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.38G024200.1 Ceric.38G024200 not classified & original description: pacid=50580039... 0.03 OrthoFinder output from all 47 species
Ehy_g29034 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.03 OrthoFinder output from all 47 species
Msp_g34466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45671 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011031 No alias not classified & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 541 588
IPR002885 Pentatricopeptide_repeat 137 184
IPR002885 Pentatricopeptide_repeat 238 285
IPR002885 Pentatricopeptide_repeat 718 735
IPR002885 Pentatricopeptide_repeat 617 644
IPR002885 Pentatricopeptide_repeat 646 673
IPR002885 Pentatricopeptide_repeat 213 236
IPR002885 Pentatricopeptide_repeat 847 876
IPR002885 Pentatricopeptide_repeat 819 844
IPR002885 Pentatricopeptide_repeat 114 134
IPR002885 Pentatricopeptide_repeat 315 338
IPR002885 Pentatricopeptide_repeat 443 470
IPR002885 Pentatricopeptide_repeat 747 776
IPR002885 Pentatricopeptide_repeat 342 370
No external refs found!