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  5. Tin_g19344

Tin_g19344


Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0001402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g19344
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene29533.t1 PDC2, Aspi01Gene29533 EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024702001 No alias Carbohydrate metabolism.fermentation.alcoholic... 0.02 OrthoFinder output from all 47 species
Solyc09g005110.3.1 PDC2, Solyc09g005110 pyruvate decarboxylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0030976 thiamine pyrophosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011766 TPP_enzyme_TPP-bd 443 564
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 36 205
IPR012000 Thiamin_PyroP_enz_cen_dom 233 348
No external refs found!