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  5. Tin_g15404

Tin_g15404


Description : not classified & original description: none


Gene families : OG0010123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010123_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g15404

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0006.g009691 No alias not classified & original description: CDS=89-2044 0.05 OrthoFinder output from all 47 species
Ceric.39G013000.1 Ceric.39G013000 not classified & original description: pacid=50583026... 0.03 OrthoFinder output from all 47 species
Dac_g16601 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g09965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30114 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 318 362
IPR002885 Pentatricopeptide_repeat 391 415
IPR002885 Pentatricopeptide_repeat 291 315
IPR002885 Pentatricopeptide_repeat 520 548
IPR002885 Pentatricopeptide_repeat 216 243
IPR002885 Pentatricopeptide_repeat 491 512
No external refs found!