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  5. Tin_g15303

Tin_g15303


Description : component *(Sm-D2) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: none


Gene families : OG0003421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g15303
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00221440 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
AT2G47640 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
Als_g31965 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029762 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Cba_g54636 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021133.4 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cre10.g453450 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Gb_19475 No alias component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
LOC_Os05g24970.1 LOC_Os05g24970 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Lfl_g38291 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Mp3g10740.1 No alias component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Msp_g40255 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
Pir_g15921 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Pp3c10_17640V3.1 Pp3c10_17640 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Pp3c12_17690V3.1 Pp3c12_17690 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Solyc09g075130.3.1 Solyc09g075130 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Spa_g22292 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Zm00001e007570_P002 Zm00001e007570 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 66 140
No external refs found!