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  5. Tin_g13819

Tin_g13819


Description : associated component *(HDC1) of histone deacetylase machineries & original description: none


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g13819

Target Alias Description ECC score Gene Family Method Actions
Aev_g05483 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aob_g03580 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ceric.1Z065200.1 Ceric.1Z065200 associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Cre03.g182600 No alias Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
Dac_g09686 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Dcu_g03126 No alias associated component *(HDC1) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
GSVIVT01000253001 No alias Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Gb_35031 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os07g29450.1 LOC_Os07g29450 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
MA_18805g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g12140.1 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Msp_g25492 No alias associated component *(HDC1) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Pir_g13585 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Zm00001e010714_P003 Zm00001e010714 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Zm00001e022328_P001 Zm00001e022328 associated component HDC1/Rxt3 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 529 571
No external refs found!