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  5. Tin_g12704

Tin_g12704 (ATCAF1, CAF1)


Aliases : ATCAF1, CAF1

Description : not classified & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12704

Target Alias Description ECC score Gene Family Method Actions
Adi_g106797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02604 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Aop_g60711 ATCAF1, CAF1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene60098.t1 ATCAF1, CAF1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0435.g069919 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.17G046000.1 ATCAF1, CAF1,... not classified & original description: pacid=50617225... 0.04 OrthoFinder output from all 47 species
Dcu_g20587 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ehy_g02479 ATCAF1, CAF1 mCSF mitochondrial RNA splicing factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013781001 CAF2, ATCAF2 CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os08g07790.1 LOC_Os08g07790 mCSF mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_14069g0010 No alias CRS2-associated factor 1, mitochondrial OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Nbi_g08909 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Ppi_g03045 ATCAF1, CAF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05287 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Ppi_g29789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56937 CAF2, ATCAF2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17718 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Smo62891 CAF2, ATCAF2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Solyc01g091940.3.1 Solyc01g091940 mCSF mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Spa_g51985 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 345 425
IPR001890 RNA-binding_CRM 224 307
No external refs found!