Tin_g12301 (PAB1)

Aliases : PAB1

Description : not classified & original description: none

Gene families : OG0004397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004397_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g12301

Target	Alias	Description	ECC score	Gene Family Method
Aev_g07679	PAB2, PABP2, ATPAB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02645	PAB2, PABP2, ATPAB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01318	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g17086	PAB2, PABP2, ATPAB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_17348	PAB6	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Lfl_g11431	PAB2, PABP2, ATPAB2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_91352g0010	ATRBP45C	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Ore_g44267	ATRBP47C', RBP47C'	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g12369	ATRBP47C', RBP47C'	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g04608	PABP4, PAB4	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	490	547
IPR000504	RRM_dom	390	459

External Links

No external refs found!