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  5. Tin_g12088

Tin_g12088


Description : component *(RRP43) of exosome EXO9 core complex & original description: none


Gene families : OG0006392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006392_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12088

Target Alias Description ECC score Gene Family Method Actions
Adi_g023869 No alias component *(RRP43) of exosome EXO9 core complex &... 0.05 OrthoFinder output from all 47 species
Aop_g25303 No alias component *(RRP43) of exosome EXO9 core complex &... 0.05 OrthoFinder output from all 47 species
Azfi_s0474.g072985 No alias component *(RRP43) of exosome EXO9 core complex &... 0.03 OrthoFinder output from all 47 species
Cba_g03113 No alias component *(RRP43) of exosome EXO9 core complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os11g20689.1 LOC_Os11g20689 component RRP43 of exosome EXO9 core complex 0.03 OrthoFinder output from all 47 species
MA_749465g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc06g075390.4.1 Solyc06g075390 component RRP43 of exosome EXO9 core complex 0.03 OrthoFinder output from all 47 species
Zm00001e003688_P003 Zm00001e003688 component RRP43 of exosome EXO9 core complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 75 208
No external refs found!