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  5. Tin_g11713

Tin_g11713


Description : not classified & original description: none


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11713

Target Alias Description ECC score Gene Family Method Actions
Adi_g014208 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117138 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001281 No alias not classified & original description: CDS=1653-4202 0.04 OrthoFinder output from all 47 species
Cre16.g691050 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Ehy_g30318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
GSVIVT01037259001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Ore_g08372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006893 No alias not classified & original description: CDS=1775-4951 0.03 OrthoFinder output from all 47 species
Sam_g52662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08448 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e028312_P001 Zm00001e028312 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR027988 BRX_N 909 936
IPR001849 PH_domain 15 124
IPR000408 Reg_chr_condens 596 643
IPR000408 Reg_chr_condens 372 423
IPR000408 Reg_chr_condens 490 539
IPR000408 Reg_chr_condens 542 591
IPR000408 Reg_chr_condens 427 475
IPR000408 Reg_chr_condens 321 369
IPR013591 Brevis_radix_dom 1111 1166
IPR000306 Znf_FYVE 647 713
No external refs found!