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  5. Tin_g11653

Tin_g11653


Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11653

Target Alias Description ECC score Gene Family Method Actions
AT1G10390 No alias Nucleoporin autopeptidase 0.04 OrthoFinder output from all 47 species
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ala_g06973 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ala_g12918 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.03 OrthoFinder output from all 47 species
Als_g02615 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Aop_g08739 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Aop_g62728 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Cba_g09959 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Cba_g33116 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G078300.1 Ceric.23G078300 nucleoporin of nuclear pore complex *(NUP98) & original... 0.06 OrthoFinder output from all 47 species
Cre02.g086887 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g07068 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g22620 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Dde_g00954 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Gb_29033 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
LOC_Os03g07580.1 NUP96, PRE,... NUP96 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
LOC_Os12g06870.1 LOC_Os12g06870 NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
LOC_Os12g06890.1 LOC_Os12g06890 NUP98 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Len_g11078 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g06213 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
MA_10434126g0020 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Mp2g01050.1 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex.... 0.03 OrthoFinder output from all 47 species
Msp_g06362 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g01454 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ore_g15205 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.05 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Solyc04g007280.3.1 Solyc04g007280 NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Spa_g06165 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e020801_P003 Zm00001e020801 NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 817 963
No external refs found!