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  5. Tin_g11140

Tin_g11140


Description : CAMTA-type transcription factor & original description: none


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11140

Target Alias Description ECC score Gene Family Method Actions
Aob_g02392 No alias CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g30774.1 LOC_Os07g30774 transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
MA_16615g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g41818 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g105230.4.1 Solyc01g105230 transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 860 878
IPR000048 IQ_motif_EF-hand-BS 884 902
IPR000048 IQ_motif_EF-hand-BS 958 977
IPR005559 CG-1_dom 25 138
IPR002110 Ankyrin_rpt 642 707
No external refs found!