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  5. Tin_g11028

Tin_g11028


Description : acTin stability co-factor *(PMIR) & original description: none


Gene families : OG0001272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11028

Target Alias Description ECC score Gene Family Method Actions
Als_g02621 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10994 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G005400.1 Ceric.16G005400 actin stability co-factor *(PMIR) & original... 0.07 OrthoFinder output from all 47 species
Dac_g11129 No alias actin stability co-factor *(PMIR) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015144001 No alias Cytoskeleton.cp-actin-dependent plastid movement.PMIR... 0.02 OrthoFinder output from all 47 species
GSVIVT01035425001 No alias Cytoskeleton.cp-actin-dependent plastid movement.PMIR... 0.04 OrthoFinder output from all 47 species
Lfl_g02431 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10024 No alias actin stability co-factor *(PMIR) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37676 PMI1 actin stability factor *(PMI1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12547 No alias actin stability co-factor *(PMIR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27186 No alias actin stability co-factor *(PMIR) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g041180.4.1 Solyc07g041180 actin stability co-factor (PMIR) 0.03 OrthoFinder output from all 47 species
Solyc08g062500.3.1 Solyc08g062500 actin stability co-factor (PMIR) 0.04 OrthoFinder output from all 47 species
Spa_g52624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR019448 NT-C2 122 263
IPR018392 LysM_dom 938 981
No external refs found!