Tin_g10992 (CLO, GFA1, MEE5)

Aliases : CLO, GFA1, MEE5

Description : component *(CLO/SNU114/MAC11) of MAC spliceosome-associated complex & original description: none

Gene families : OG0005717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005717_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g10992
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
Aop_g09606	CLO, GFA1, MEE5	component *(CLO/SNU114/MAC11) of MAC...	0.04	OrthoFinder output from all 47 species
Cre17.g737250	CLO, GFA1, MEE5	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	OrthoFinder output from all 47 species
GSVIVT01012881001	CLO, GFA1, MEE5	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Gb_08962	CLO, GFA1, MEE5	protein factor SNU114/U5-116kDa of U5 small nuclear...	0.03	OrthoFinder output from all 47 species
Lfl_g07092	CLO, GFA1, MEE5	component *(CLO/SNU114/MAC11) of MAC...	0.03	OrthoFinder output from all 47 species
Spa_g01974	CLO, GFA1, MEE5	component *(CLO/SNU114/MAC11) of MAC...	0.04	OrthoFinder output from all 47 species
Zm00001e037442_P001	CLO, GFA1, MEE5,...	protein factor SNU114/U5-116kDa of U5 small nuclear...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	518	592
IPR005517	Transl_elong_EFG/EF2_IV	733	849
IPR031950	EFTUD2_N	3	128
IPR000640	EFG_V-like	852	940
IPR000795	T_Tr_GTP-bd_dom	152	356

External Links

No external refs found!