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  5. Tin_g10875

Tin_g10875 (FCA)


Aliases : FCA

Description : transcription factor *(FCA/SSF) & original description: none


Gene families : OG0001208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g10875

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00168380 FCA,... Flowering time control protein FCA OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g021978 FCA transcription factor *(FCA/SSF) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g41833 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28286 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28529 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03213 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g39063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G023200.1 FCA, Ceric.04G023200 transcription factor *(FCA/SSF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.06G016000.1 Ceric.06G016000 not classified & original description: pacid=50619514... 0.04 OrthoFinder output from all 47 species
Ceric.19G065300.1 RBP-DR1,... not classified & original description: pacid=50575797... 0.04 OrthoFinder output from all 47 species
Dac_g03249 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12063 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03762 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07627 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07629 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13021 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19292 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_06455 RBP-DR1, AtRBP-DR1 RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os09g03610.1 FCA, LOC_Os09g03610 no description available(sp|q6k271|fca_orysj : 775.0) 0.04 OrthoFinder output from all 47 species
Lfl_g06188 FCA transcription factor *(FCA/SSF) & original description: none 0.06 OrthoFinder output from all 47 species
MA_114047g0010 FCA Flowering time control protein FCA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp7g15600.1 FCA Flowering time control protein FCA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g06543 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g02118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11080 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08750 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19709 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13897 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31456 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07218 No alias transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g058450.3.1 FCA, Solyc01g058450 Flowering time control protein FCA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g074360.4.1 RBP-DR1,... RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e009433_P002 FCA, Zm00001e009433 no description available(sp|b8bcz8|fca_orysi : 625.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 73 137
IPR000504 RRM_dom 164 224
IPR001202 WW_dom 633 659
No external refs found!