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  5. Tin_g10601

Tin_g10601


Description : nucleocytoplasmic transport karyopherin *(PLANTKAP) & original description: none


Gene families : OG0004120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g10601

Target Alias Description ECC score Gene Family Method Actions
Dac_g08945 No alias nucleocytoplasmic transport karyopherin *(PLANTKAP) &... 0.03 OrthoFinder output from all 47 species
Gb_12572 No alias PLANTKAP nucleocytoplasmic transport karyopherin 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003694 No alias nucleocytoplasmic transport karyopherin *(PLANTKAP) &... 0.03 OrthoFinder output from all 47 species
Solyc01g057520.4.1 Solyc01g057520 PLANTKAP nucleocytoplasmic transport karyopherin 0.02 OrthoFinder output from all 47 species
Spa_g37295 No alias nucleocytoplasmic transport karyopherin *(PLANTKAP) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0031267 small GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 29 95
No external refs found!