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Tin_g10131


Description : SSU processome assembly factor *(SOF1) & original description: none


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g10131

Target Alias Description ECC score Gene Family Method Actions
Ceric.02G115500.1 Ceric.02G115500 SSU processome assembly factor *(SOF1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.67 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Cre07.g318702 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01020601001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Mp5g11980.1 No alias SSU processome assembly factor (SOF1) 0.03 OrthoFinder output from all 47 species
Solyc07g053660.3.1 Solyc07g053660 SSU processome assembly factor (SOF1) 0.03 OrthoFinder output from all 47 species
Zm00001e006402_P001 Zm00001e006402 SSU processome assembly factor (SOF1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 328 360
IPR001680 WD40_repeat 285 316
IPR001680 WD40_repeat 61 95
IPR001680 WD40_repeat 103 136
IPR007287 Sof1 361 447
No external refs found!