1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g09553

Tin_g09553


Description : assembly factor involved in RuBisCo assembly *(RAF1) & original description: none


Gene families : OG0006523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006523_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09553
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00163120 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Aev_g05322 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ala_g02002 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Aob_g17485 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ceric.03G026300.1 Ceric.03G026300 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Dac_g13000 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ehy_g03671 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Len_g10651 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Lfl_g39152 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
Msp_g10495 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.06 OrthoFinder output from all 47 species
Ore_g05484 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Pnu_g06513 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Pp3c18_4320V3.1 Pp3c18_4320 No annotation 0.01 OrthoFinder output from all 47 species
Spa_g04323 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004803 transposase activity IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006313 transposition, DNA-mediated IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0032196 transposition IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR040858 Raf1_C 312 456
IPR040781 Raf1_HTH 116 175
IPR041358 Raf1_N 187 291
No external refs found!