Aliases : LHCB4.1
Description : component *(LHCb4) of LHC-II complex & original description: none
Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00239610 | LHCB4.2,... | Photosynthesis.photophosphorylation.photosystem... | 0.15 | OrthoFinder output from all 47 species | |
AT3G08940 | LHCB4.2 | light harvesting complex photosystem II | 0.11 | OrthoFinder output from all 47 species | |
AT5G01530 | LHCB4.1 | light harvesting complex photosystem II | 0.12 | OrthoFinder output from all 47 species | |
Adi_g047687 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
Adi_g079332 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
Aev_g13668 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
Ala_g11240 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
Als_g08280 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
Aob_g39718 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
Aop_g05395 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.17 | OrthoFinder output from all 47 species | |
Aop_g05396 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
Aspi01Gene47726.t1 | LHCB4.1, Aspi01Gene47726 | component *(LHCb4) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
Azfi_s0173.g055756 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original... | 0.09 | OrthoFinder output from all 47 species | |
Cba_g11090 | No alias | component *(LHCb4) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Cba_g34516 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ceric.05G075200.1 | LHCB4.2, Ceric.05G075200 | component *(LHCb4) of LHC-II complex & original... | 0.19 | OrthoFinder output from all 47 species | |
Ceric.06G083500.1 | LHCB4.2, Ceric.06G083500 | not classified & original description: pacid=50619025... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.22G069400.1 | LHCB4.1, Ceric.22G069400 | component *(LHCb4) of LHC-II complex & original... | 0.16 | OrthoFinder output from all 47 species | |
Cre17.g720250 | LHCB4.3 | Photosynthesis.photophosphorylation.photosystem... | 0.1 | OrthoFinder output from all 47 species | |
Dac_g23809 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.17 | OrthoFinder output from all 47 species | |
Dcu_g45560 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
Dcu_g49585 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
Dde_g10605 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
Ehy_g03348 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
Ehy_g21710 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Gb_13368 | LHCB4.3 | component LHCb4 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
Gb_38595 | LHCB4.1 | component LHCb4 of LHC-II complex | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os07g37240.1 | LHCB4.1, LOC_Os07g37240 | component LHCb4 of LHC-II complex | 0.15 | OrthoFinder output from all 47 species | |
Len_g31128 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.17 | OrthoFinder output from all 47 species | |
Len_g34078 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
MA_129206g0010 | LHCB4.2 | component LHCb4 of LHC-II complex | 0.12 | OrthoFinder output from all 47 species | |
Mp1g16850.1 | LHCB4.1 | component LHCb4 of LHC-II complex | 0.18 | OrthoFinder output from all 47 species | |
Msp_g07941 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
Nbi_g01855 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
Pir_g15460 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
Pnu_g33035 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
Pp3c12_25460V3.1 | LHCB4.1, Pp3c12_25460 | light harvesting complex photosystem II | 0.06 | OrthoFinder output from all 47 species | |
Ppi_g08836 | LHCB4.3 | component *(LHCb4) of LHC-II complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g15010 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
Smo149722 | LHCB4.2 | Photosynthesis.photophosphorylation.photosystem... | 0.06 | OrthoFinder output from all 47 species | |
Solyc09g014520.3.1 | LHCB4.1, Solyc09g014520 | component LHCb4 of LHC-II complex | 0.16 | OrthoFinder output from all 47 species | |
Spa_g08357 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Spa_g50929 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
Spa_g50930 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Spa_g50931 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
Zm00001e010547_P001 | LHCB4.1, Zm00001e010547 | component LHCb4 of LHC-II complex | 0.15 | OrthoFinder output from all 47 species | |
Zm00001e035235_P001 | LHCB4.1, Zm00001e035235 | component LHCb4 of LHC-II complex | 0.14 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
MF | GO:0009055 | electron transfer activity | IEP | HCCA |
CC | GO:0009507 | chloroplast | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009522 | photosystem I | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009536 | plastid | IEP | HCCA |
CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016851 | magnesium chelatase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0034357 | photosynthetic membrane | IEP | HCCA |
BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
CC | GO:0042651 | thylakoid membrane | IEP | HCCA |
BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
MF | GO:0051002 | ligase activity, forming nitrogen-metal bonds | IEP | HCCA |
MF | GO:0051003 | ligase activity, forming nitrogen-metal bonds, forming coordination complexes | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR022796 | Chloroa_b-bind | 65 | 261 |
No external refs found! |