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  5. Tin_g07774

Tin_g07774 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g07774

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 UPF1, ATUPF1,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 OrthoFinder output from all 47 species
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.07 OrthoFinder output from all 47 species
Adi_g055495 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Aev_g29734 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Ala_g16050 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene01492.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036066 UPF1, ATUPF1, LBA1 not classified & original description: CDS=178-2511 0.04 OrthoFinder output from all 47 species
Ceric.37G063700.1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Cre02.g092500 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 OrthoFinder output from all 47 species
Dcu_g11492 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.08 OrthoFinder output from all 47 species
Dcu_g20574 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01013247001 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.06 OrthoFinder output from all 47 species
Gb_10556 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Gb_22830 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species
LOC_Os07g31340.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
MA_10326503g0010 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
MA_10436671g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
MA_369530g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
Mp1g01200.1 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Pir_g11844 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Pir_g66607 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52670 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004722 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sam_g25380 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Solyc08g007110.4.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species
Spa_g48749 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Spa_g48750 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Zm00001e010427_P002 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018999 UPF1_CH/ZBD 153 304
IPR040812 UPF1_1B_dom 356 445
IPR041679 DNA2/NAM7-like_C 714 909
IPR006935 Helicase/UvrB_N 503 569
IPR041677 DNA2/NAM7_AAA_11 607 704
No external refs found!