1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g06396

Tin_g06396 (emb2394)


Aliases : emb2394

Description : component *(uL6c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003589_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06396

Target Alias Description ECC score Gene Family Method Actions
AT1G05190 emb2394 Ribosomal protein L6 family 0.02 OrthoFinder output from all 47 species
Aev_g41502 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g11098 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g66463 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.25G034500.1 emb2394, Ceric.25G034500 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre09.g415950 emb2394 Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Ehy_g05438 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp1g03630.1 emb2394 component psRPL6 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Ore_g05671 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011918 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g15102 No alias component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc12g100160.3.1 emb2394, Solyc12g100160 component psRPL6 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e038182_P002 emb2394, Zm00001e038182 component psRPL6 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 168 242
IPR020040 Ribosomal_L6_a/b-dom 90 160
No external refs found!