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  5. Tin_g06123

Tin_g06123 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06123
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Aev_g16430 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07672 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.02 OrthoFinder output from all 47 species
Ceric.39G043300.1 PUM7, APUM7,... not classified & original description: pacid=50583488... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020878.26 PUM7, APUM7 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_63194g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g05874 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo53500 APUM8, PUM8 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 647 677
IPR001313 Pumilio_RNA-bd_rpt 798 825
IPR001313 Pumilio_RNA-bd_rpt 682 715
IPR001313 Pumilio_RNA-bd_rpt 612 641
IPR001313 Pumilio_RNA-bd_rpt 535 568
IPR001313 Pumilio_RNA-bd_rpt 571 604
IPR001313 Pumilio_RNA-bd_rpt 755 788
IPR001313 Pumilio_RNA-bd_rpt 720 737
IPR000571 Znf_CCCH 408 429
No external refs found!