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  5. Tin_g05933

Tin_g05933


Description : flap structure-specific endonuclease *(FEN1) & original description: none


Gene families : OG0002365 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002365_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05933

Target Alias Description ECC score Gene Family Method Actions
AT5G26680 No alias 5'-3' exonuclease family protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene29770.t2 Aspi01Gene29770 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29772.t1 Aspi01Gene29772 flap structure-specific endonuclease *(FEN1) & original... 0.04 OrthoFinder output from all 47 species
Dac_g28790 No alias flap structure-specific endonuclease *(FEN1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01031344001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
LOC_Os05g46270.1 LOC_Os05g46270 flap structure-specific endonuclease (FEN1). flap... 0.02 OrthoFinder output from all 47 species
Solyc01g102370.4.1 Solyc01g102370 flap structure-specific endonuclease (FEN1). flap... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR006085 XPG_DNA_repair_N 1 107
IPR006086 XPG-I_dom 150 234
No external refs found!