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  5. Tin_g05664

Tin_g05664 (EMB1989, RPB2, NRPB2)


Aliases : EMB1989, RPB2, NRPB2

Description : component *(NRPB2) of RNA polymerase II complex & original description: none


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05664
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Adi_g061129 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ala_g17610 EMB1989, RPB2, NRPB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02927 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000158.16 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.10 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g06906 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Ppi_g02405 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g07591 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Spa_g08100 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 709 1079
IPR007645 RNA_pol_Rpb2_3 467 531
IPR007642 RNA_pol_Rpb2_2 203 394
IPR007646 RNA_pol_Rpb2_4 566 627
IPR007644 RNA_pol_bsu_protrusion 33 442
IPR007641 RNA_pol_Rpb2_7 1081 1172
IPR007647 RNA_pol_Rpb2_5 651 702
No external refs found!