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  5. Tin_g05653

Tin_g05653


Description : tRNA cytidine acetyltransferase & original description: none


Gene families : OG0005981 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005981_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05653

Target Alias Description ECC score Gene Family Method Actions
AT1G10490 No alias Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) 0.03 OrthoFinder output from all 47 species
AT3G57940 No alias Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) 0.03 OrthoFinder output from all 47 species
Adi_g019634 No alias tRNA cytidine acetyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G059500.1 Ceric.19G059500 tRNA cytidine acetyltransferase & original description:... 0.05 OrthoFinder output from all 47 species
Cre03.g192850 No alias RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g10728 No alias tRNA cytidine acetyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022250001 No alias RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_28297 No alias tRNA/rRNA cytidine acetyltransferase. rRNA cytidine... 0.03 OrthoFinder output from all 47 species
MA_10435179g0010 No alias tRNA/rRNA cytidine acetyltransferase. rRNA cytidine... 0.03 OrthoFinder output from all 47 species
Mp2g04980.1 No alias tRNA/rRNA cytidine acetyltransferase. rRNA cytidine... 0.03 OrthoFinder output from all 47 species
Ppi_g03973 No alias tRNA cytidine acetyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Smo140315 No alias RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc04g051670.3.1 Solyc04g051670 tRNA/rRNA cytidine acetyltransferase. rRNA cytidine... 0.04 OrthoFinder output from all 47 species
Zm00001e026623_P001 Zm00001e026623 tRNA/rRNA cytidine acetyltransferase. rRNA cytidine... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000182 GNAT_dom 517 745
IPR013562 TmcA_N 8 200
IPR027992 tRNA_bind_dom 760 972
IPR007807 Helicase_dom 280 476
No external refs found!