Tin_g05389

Description : component *(uL22) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g05389

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00159640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00211990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00013p00224030	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.05	OrthoFinder output from all 47 species
AT1G67430	No alias	Ribosomal protein L22p/L17e family protein	0.05	OrthoFinder output from all 47 species
Adi_g041566	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene27569.t1	Aspi01Gene27569	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s2217.g109896	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g32685	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01010449001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os08g41810.1	LOC_Os08g41810	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os09g08430.1	LOC_Os09g08430	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Len_g18743	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_10430182g0010	No alias	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Ppi_g07930	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g26817	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021928	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g15137	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g071870.3.1	Solyc06g071870	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Solyc06g071880.4.1	Solyc06g071880	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g15052	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g51098	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e003661_P001	Zm00001e003661	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e005470_P001	Zm00001e005470	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e021953_P003	Zm00001e021953	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e026882_P002	Zm00001e026882	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e031261_P001	Zm00001e031261	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0004017	adenylate kinase activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006553	lysine metabolic process	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009085	lysine biosynthetic process	IEP	HCCA
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046451	diaminopimelate metabolic process	IEP	HCCA
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	152

External Links

No external refs found!

Tin_g05389

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation