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  5. Tin_g05223

Tin_g05223


Description : component *(NOT3) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00093740 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
AMTR_s00012p00217710 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g021088 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Aop_g00795 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ceric.09G054000.1 Ceric.09G054000 component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.06 OrthoFinder output from all 47 species
Cre04.g227350 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Dcu_g13304 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Ehy_g01609 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Pnu_g13489 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Solyc12g019860.2.1 Solyc12g019860 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Zm00001e005243_P002 Zm00001e005243 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Zm00001e012376_P003 Zm00001e012376 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007282 NOT2/3/5_C 744 876
IPR007207 Not_N 4 228
No external refs found!