Tin_g04951 (ATPCNA1, PCNA1)

Aliases : ATPCNA1, PCNA1

Description : sliding clamp protein *(PCNA) & original description: none

Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g04951
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00198200	ATPCNA1, PCNA1,...	Cell cycle.interphase.DNA...	0.04	OrthoFinder output from all 47 species
AT1G07370	ATPCNA1, PCNA1	proliferating cellular nuclear antigen 1	0.04	OrthoFinder output from all 47 species
Aop_g11632	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.141	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021319.67	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.02	OrthoFinder output from all 47 species
Cre12.g515850	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.02	OrthoFinder output from all 47 species
MA_10434805g0020	ATPCNA1, PCNA1	sliding clamp protein (PCNA)	0.03	OrthoFinder output from all 47 species
Mp2g02690.1	PCNA2, ATPCNA2	sliding clamp protein (PCNA)	0.03	OrthoFinder output from all 47 species
Smo105735	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.03	OrthoFinder output from all 47 species
Solyc06g076660.3.1	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.02	OrthoFinder output from all 47 species
Zm00001e016159_P001	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.03	OrthoFinder output from all 47 species
Zm00001e023660_P001	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006275	regulation of DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022649	Pr_cel_nuc_antig_C	195	322
IPR022648	Pr_cel_nuc_antig_N	69	193

External Links

No external refs found!