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  5. Tin_g03843

Tin_g03843


Description : not classified & original description: none


Gene families : OG0005484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g03843

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0531.g075826 No alias not classified & original description: CDS=125-1186 0.03 OrthoFinder output from all 47 species
GSVIVT01017458001 No alias WD repeat-containing protein 55 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ore_g41916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 13 95
IPR001680 WD40_repeat 255 291
No external refs found!