Tin_g03691

Description : small subunit sigma of AP-4 vacuole cargo adaptor complex & original description: none

Gene families : OG0006894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006894_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g03691
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene10259.t1	Aspi01Gene10259	small subunit sigma of AP-4 vacuole cargo adaptor...	0.04	OrthoFinder output from all 47 species
Cre07.g330950	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.03	OrthoFinder output from all 47 species
MA_23830g0010	No alias	AP-4 complex subunit sigma OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Solyc05g026130.3.1	Solyc05g026130	small subunit sigma of AP-4 vacuole cargo adaptor complex	0.04	OrthoFinder output from all 47 species
Zm00001e022339_P001	Zm00001e022339	small subunit sigma of AP-4 vacuole cargo adaptor complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0034227	tRNA thio-modification	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022775	AP_mu_sigma_su	2	141

External Links

No external refs found!