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  5. Tin_g03365

Tin_g03365


Description : component *(USP39) of U4/U6.U5 tri-snRNP complex & original description: none


Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g03365
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Ala_g04780 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Aop_g09374 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Cba_g10619 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Ceric.08G005200.1 Ceric.08G005200 component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Cre17.g721600 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Mp1g24510.1 No alias protein factor (USP39) of U4/U6 U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Ore_g16909 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g11614 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022652 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 88 149
IPR001394 Peptidase_C19_UCH 189 517
No external refs found!