Tin_g03149 (SCN1)

Aliases : SCN1

Description : guanine nucleotide dissociation inhibitor *(RopGDI) & original description: none

Gene families : OG0001513 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001513_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g03149

Target	Alias	Description	ECC score	Gene Family Method
AT1G12070	No alias	Immunoglobulin E-set superfamily protein	0.02	OrthoFinder output from all 47 species
AT1G62450	No alias	Immunoglobulin E-set superfamily protein	0.03	OrthoFinder output from all 47 species
Ala_g19357	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Aop_g08108	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Dde_g51936	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.04	OrthoFinder output from all 47 species
Ehy_g04328	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Gb_39963	SCN1	guanine nucleotide dissociation inhibitor (RopGDI)	0.03	OrthoFinder output from all 47 species
LOC_Os02g48730.1	SCN1, LOC_Os02g48730	guanine nucleotide dissociation inhibitor (RopGDI)	0.02	OrthoFinder output from all 47 species
Mp2g06810.1	SCN1	guanine nucleotide dissociation inhibitor (RopGDI)	0.02	OrthoFinder output from all 47 species
Pnu_g18266	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Ppi_g00513	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006319	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Sam_g06913	No alias	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005092	GDP-dissociation inhibitor activity	None	Extended
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	None	Extended
BP	GO:0007265	Ras protein signal transduction	None	Extended
BP	GO:0007266	Rho protein signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000406	Rho_GDI	32	219

External Links

No external refs found!

Tin_g03149 (SCN1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation