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  5. Tin_g02882

Tin_g02882 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: none


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g02882

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00165040 STA1, EMB2770,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT4G03430 STA1, EMB2770 pre-mRNA splicing factor-related 0.02 OrthoFinder output from all 47 species
Adi_g055878 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ala_g05725 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Aob_g02331 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z128700.1 STA1, EMB2770,... component *(PRPF6) of U5 snRNP complex & original... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.19 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre14.g633650 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Dcu_g14994 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01030385001 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_02940 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
LOC_Os01g15860.1 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35550.1 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Len_g00746 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Lfl_g13254 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Mp6g10790.1 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Nbi_g11692 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g19399 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.06 OrthoFinder output from all 47 species
Pir_g09796 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g32052 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.06 OrthoFinder output from all 47 species
Sam_g26501 No alias component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Smo172051 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Spa_g01165 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Zm00001e018293_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Zm00001e039748_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010491 PRP1_N 97 265
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!