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  5. Tin_g02795

Tin_g02795


Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0005342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g02795

Target Alias Description ECC score Gene Family Method Actions
Aev_g03344 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aob_g17336 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Cba_g32266 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.29 No alias Enzyme classification.EC_2 transferases.EC_2.1... 0.01 OrthoFinder output from all 47 species
Ehy_g01559 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
GSVIVT01025178001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
LOC_Os04g01480.1 LOC_Os04g01480 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g04204 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
MA_10432089g0010 No alias Zinc finger CCCH domain-containing protein 24... 0.02 OrthoFinder output from all 47 species
MA_10435191g0020 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ppi_g02254 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Solyc11g069340.2.1 Solyc11g069340 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 108 170
IPR025714 Methyltranfer_dom 492 555
IPR010280 U5_MeTrfase_fam 610 660
IPR000571 Znf_CCCH 30 56
No external refs found!