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  5. Tin_g01996

Tin_g01996


Description : substrate adaptor *(PRP17) of CUL4-based E3 ubiquiTin ligase complex & original description: none


Gene families : OG0006597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g01996

Target Alias Description ECC score Gene Family Method Actions
Adi_g058720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G062500.1 Ceric.05G062500 substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.07 OrthoFinder output from all 47 species
GSVIVT01020240001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.05 OrthoFinder output from all 47 species
LOC_Os03g27970.1 LOC_Os03g27970 component Prp17 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Ore_g13219 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04813 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Smo78344 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Solyc02g078970.4.1 Solyc02g078970 component Prp17 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Zm00001e001921_P002 Zm00001e001921 component Prp17 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Zm00001e038006_P002 Zm00001e038006 component Prp17 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 552 589
IPR001680 WD40_repeat 332 370
IPR001680 WD40_repeat 291 327
IPR001680 WD40_repeat 511 546
IPR001680 WD40_repeat 419 455
No external refs found!