Tin_g01837 (CLPS3)

Aliases : CLPS3

Description : component *(Clp1) of Cleavage Factor II (CF-IIm) complex & original description: none

Gene families : OG0003520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003520_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g01837

Target	Alias	Description	ECC score	Gene Family Method
Adi_g063486	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Aop_g22381	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.04	OrthoFinder output from all 47 species
Ceric.38G063700.1	CLPS3, Ceric.38G063700	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.05	OrthoFinder output from all 47 species
Mp6g10380.1	CLPS3	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.03	OrthoFinder output from all 47 species
Msp_g12143	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.01	OrthoFinder output from all 47 species
Sam_g15976	No alias	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005956	protein kinase CK2 complex	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1902554	serine/threonine protein kinase complex	IEP	HCCA
CC	GO:1902911	protein kinase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032319	CLP1_P	133	321
IPR032324	Clp1_N	10	99
IPR010655	Clp1_C	326	437

External Links

No external refs found!