Tin_g01630

Description : component *(uS5) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g01630

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	XW6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT1G58684	No alias	Ribosomal protein S5 family protein	0.04	OrthoFinder output from all 47 species
AT1G58983	No alias	Ribosomal protein S5 family protein	0.04	OrthoFinder output from all 47 species
AT1G59359	No alias	Ribosomal protein S5 family protein	0.04	OrthoFinder output from all 47 species
AT2G41840	No alias	Ribosomal protein S5 family protein	0.07	OrthoFinder output from all 47 species
Adi_g040223	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aev_g07498	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aev_g10214	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g12987	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g02040	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aop_g09364	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0110.g045473	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0377.g067313	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g21907	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.30G013900.1	Ceric.30G013900	component *(uS5) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ceric.31G046200.1	Ceric.31G046200	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.135	XW6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Dac_g00614	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dac_g05646	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dde_g04227	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01033299001	No alias	40S ribosomal protein S2-4 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_04606	No alias	component RPS2 of SSU proteome	0.03	OrthoFinder output from all 47 species
Gb_04608	No alias	component RPS2 of SSU proteome	0.06	OrthoFinder output from all 47 species
Gb_04609	No alias	component RPS2 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g59310.1	LOC_Os03g59310	component RPS2 of SSU proteome	0.09	OrthoFinder output from all 47 species
LOC_Os07g10660.1	LOC_Os07g10660	component RPS2 of SSU proteome	0.07	OrthoFinder output from all 47 species
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.06	OrthoFinder output from all 47 species
MA_565182g0010	No alias	40S ribosomal protein S2-2 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.05	OrthoFinder output from all 47 species
Nbi_g03400	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g03516	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ore_g03514	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g11571	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g29029	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pnu_g09117	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c20_18740V3.1	Pp3c20_18740	Ribosomal protein S5 family protein	0.04	OrthoFinder output from all 47 species
Pp3c24_5780V3.1	Pp3c24_5780	Ribosomal protein S5 family protein	0.03	OrthoFinder output from all 47 species
Sam_g25636	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g26796	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Solyc04g063290.3.1	Solyc04g063290	component RPS2 of SSU proteome	0.09	OrthoFinder output from all 47 species
Solyc04g074300.3.1	Solyc04g074300	component RPS2 of SSU proteome	0.08	OrthoFinder output from all 47 species
Spa_g13171	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g14513	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g17385	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g40249	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Spa_g47984	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Spa_g50366	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Spa_g57025	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e006090_P001	Zm00001e006090	component RPS2 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e011816_P001	Zm00001e011816	component RPS2 of SSU proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001897	cytolysis by symbiont of host cells	IEP	HCCA
BP	GO:0001907	killing by symbiont of host cells	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
CC	GO:0009349	riboflavin synthase complex	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051701	biological process involved in interaction with host	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0090729	toxin activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	165	237
IPR013810	Ribosomal_S5_N	81	145

External Links

No external refs found!

Tin_g01630

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation